Home Fundamentals Research Data Management FAIR Data Principles Metadata Ontologies Data Sharing Data Publications Data Management Plan Version Control & Git Public Data Repositories Persistent Identifiers Electronic Lab Notebooks (ELN) DataPLANT Implementations Annotated Research Context ARC specification ARC Commander Swate MetadataQuiz DataHUB DataPLAN Ontology Service Landscape Manuals ARC Commander Setup Git Installation ARC Commander Installation Windows MacOS Linux ARC Commander DataHUB Access Before we start Central Functions Initialize Clone Connect Synchronize Configure Branch ISA Metadata Functions ISA Metadata Investigation Study Assay Update Export ARCitect Installation - Windows Installation - macOS Installation - Linux QuickStart QuickStart - Videos ARCmanager What is the ARCmanager? Connect to your DataHUB View your ARCs Create new ARCs Add new studies and assays Upload files Add metadata to your ARCs Swate QuickStart QuickStart - Videos Annotation tables Building blocks Building Block Types Adding a Building Block Filling cells with ontology terms Advanced Term Search File Picker Templates Contribute Templates ISA-JSON DataHUB Overview User Settings Generate a Personal Access Token (PAT) Projects Panel ARC Panel Forks Working with files ARC Settings ARC Wiki Groups Panel Create a new user group CQC Pipelines & validation Find and use ARC validation packages Data publications Passing Continuous Quality Control Submitting ARCs with ARChigator Track publication status Use your DOIs Guides ARC User Journey Create your ARC ARCitect QuickStart ARCitect QuickStart - Videos ARC Commander QuickStart ARC Commander QuickStart (Experts) Annotate Data in your ARC Annotation Principles ISA File Types Best Practices For Data Annotation Swate QuickStart Swate QuickStart - Videos Swate Walk-through Share your ARC Register at the DataHUB DataPLANT account Invite collaborators to your ARC Sharing ARCs via the DataHUB Work with your ARC Using ARCs with Galaxy Computational Workflows CWL Introduction CWL runner installation CWL Examples CWL Metadata Recommended ARC practices Syncing recommendation Keep files from syncing to the DataHUB Managing ARCs across locations Working with large data files Adding external data to the ARC ARCs in Enabling Platforms Publication to ARC Troubleshooting Git Troubleshooting & Tips Contribute Swate Templates Knowledge Base Teaching Materials Events 2023 Nov: CEPLAS PhD Module Oct: CSCS CEPLAS Start Your ARC Sept: MibiNet CEPLAS Start Your ARC July: RPTU Summer School on RDM July: Data Steward Circle May: CEPLAS Start Your ARC Series Start Your ARC Series - Videos Events 2024 TRR175 Becoming FAIR CEPLAS ARC Trainings – Spring 2024 MibiNet CEPLAS DataPLANT Tool-Workshops TRR175 Tutzing Retreat Frequently Asked Questions

DataHUB Manual

last updated at 2023-07-07

Welcome to the DataHUB Manual. Please explore the sections on the left to find guides on the main DataHUB features.

Developers, please check out the GitHub repository to the DataHUB

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