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Assay

last updated at 2022-12-13 Addition of assays

⚠️ Make sure to close all isa.*.xlsx files before submitting a new command to the command line, as otherwise the information cannot be saved by the ARC Commander.

⚠️ An assay identifier also sets the folder name, so ensure to avoid special characters!

Field Description Input
StudyIdentifier Name of the study in which the assay is situated
AssayIdentifier (Mandatory) Name of the assay of interest GelBasedProteomicsWT
MeasurementType A term to qualify the endpoint, or what is being measured (e.g. gene expression profiling or protein identification). The term can be free text or from, for example, a controlled vocabulary or an ontology. If the latter source is used the Term Accession Number and Term Source REF fields below are required. Proteomics
MeasurementTypeTermAccessionNumber The accession number from the Term Source associated with the selected term.
MeasurementTypeTermSourceREF The Source REF has to match one of the Term Source Name declared in the Ontology Source Reference section.
TechnologyType Term to identify the technology used to perform the measurement, e.g. DNA microarray, mass spectrometry. The term can be free text or from, for example, a controlled vocabulary or an ontology. If the latter source is used the Term Accession Number and Term Source REF fields below are required. Mass spectrometry
TechnologyTypeTermAccessionNumber The accession number from the Term Source associated with the selected term.
TechnologyTypeTermSourceREF Identifies the controlled vocabulary or ontology that this term comes from. The Source REF has to match one of the Term Source Names declared in the Ontology Source Reference section.
TechnologyPlatform Manufacturer and platform name, e.g. Bruker AVANCE AB Sciex TT6600

If no study identifier is given, a study is created with the assay identifier as study identifier. Instead of using the editor, the following command can be used:
arc assay add -a GelBasedProteomicsM21 --measurementtype Proteomics --technologytype "Mass spectrometry" --technologyplatform "AB Sciex TT6600"

Listing and inspecting registered assays Editing assay information Removing assays

💡 To remove, unregister, or delete an assay both study identifier and assay identifier are required to ensure the correct assay is chosen.

Moving assays
Contribution Guide 📖
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