Explore and start agentic

At this point we’ll explore the ARC using ARCgentic. For this we will be using a more advanced version of Viola’s ARC, that includes some proteomics data of her cold stress experiment.

✔︎ In addition to the raw data, my ARC now contains the annotated data analysis “Visualization”.
✔︎ And, I’ve added experimental details and some data of my Proteomics dataset.

The ARC now looks like this:

• Directoryassays

  • DirectoryProteomics_DataAnalysis

    • README.md
    • Directorydataset

      • DirectoryMSFraggerOutput

        • combined_protein.csv
      • combined_protein.fasta
    • isa.assay.xlsx
    • Directoryprotocols

      • AssayTemplate_Proteomics_DataAnalysis.json
  • DirectoryProteomics_MS

    • README.md
    • Directorydataset

      • DirectoryMS_Raw

        • WT_Cold_1_Measured.d
        • WT_Cold_2_Measured.d
        • WT_Cold_3_Measured.d
        • WT_RT_1_Measured.d
        • WT_RT_2_Measured.d
        • WT_RT_3_Measured.d
      • isa.assay.xlsx
    • Directoryprotocols

      • AssayTemplate_Proteomics_MS.json
  • DirectorySugarMeasurement

    • README.md
    • Directorydataset

      • sugar_result.csv
    • isa.assay.xlsx
    • Directoryprotocols

      • sugar_extraction_protocol.md
  • DirectoryVisualization

    • README.md
    • Directorydataset

      • heatmap.svg
    • isa.assay.xlsx
    • Directoryprotocols

      • heatmap.py
• isa.investigation.xlsx
• Directoryruns

  • …
• Directorystudies

  • DirectoryAthalianaColdStress

    • README.md
    • isa.study.xlsx
    • Directoryprotocols

      • growth_protocol.md
    • resources
• Directoryworkflows

  • …

Tip

If you want to see the details of this ARC advanced, follow the start-here guide.

Finally, let’s explore some bigger data.

Download Check-point

Download Check-point Final