Start Your ARC Workshop Series

Preparation for Session 02 – "Build your ARC"
(May 31st, 2023)


Dominik Brilhaus – CEPLAS Data Science

Checklist ARC hands-on

💡 Please follow the next slides to register with DataPLANT and install some helper tools on your computer

  • ✅ Register at DataPLANT
  • ✅ Find your terminal
  • ✅ Install ARC Commander and dependencies on your computer

DataPLANT Registration

If you do not have a DataPLANT account, please register at the DataPLANT website.

Role and consortium

Please add your Project/consortium (e.g. CEPLAS, SFB, TRR) and choose the role Guest

The command line

Find the command-line interface (CLI) on your system.

  • On Windows: Enter powershell into the explorer path
  • On MacOS: Search terminal via spotlight (⌘ + ␣) or navigate to Applications -> Utilities -> Terminal

> Note: In our tutorials we sometimes use "terminal", "command-line interface (CLI)" and "powershell" interchangeably.

ARC Commander Installation

Please install the latest version of the ARC Commander and dependencies for your operating system according to the manual's setup instructions.

Check if the ARC Commander is functional by displaying the ARC Commander version and help menu:

arc --version

Hands-on: Bring your own data

In the hands-on session, we would like to start creating an ARC together.
To do so, please bring some data!

This can be data of your current research project or an already published manuscript with supplemental data. Anything that you feel familiar with.

Resources

CEPLAS Data Science

Website: https://www.ceplas.eu/en/research/data-science-and-data-management/

DataPLANT (nfdi4plants)

Website: https://nfdi4plants.org/
Knowledge Base: https://nfdi4plants.org/nfdi4plants.knowledgebase/
DataHUB: https://git.nfdi4plants.org
GitHub: https://github.com/nfdi4plants

Title slide to class

Source to slide(s)

../custom/bricks/ceplas-title-02.md

- Install ARCitect on your computer :white_check_mark:

Source to slide(s)

../../../bricks/checklist_ARC_hands-on.md

Source to slide(s)

../../../bricks/datahub_registration.md

Source to slide(s)

../custom/bricks/ceplas-datahub-registration.md

Source to slide(s)

../../../bricks/tutorial_IntroCLI-The_command_line.md

Source to slide(s)

../../../bricks/tutorial_arc_installation.md

Source to slide(s)

../../../bricks/arc-hands-on-byod.md

Source to slide(s)

../custom/bricks/links-resources.md